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Table 1 Genes altered by siRNA knockdown of MAP3K8 in A549 cells after IL-1β stimulation of A549 cells

From: MAP3K8 is a potential therapeutic target in airway epithelial inflammation

ID

Dif1

Dif2

Dif4

Dif6

Dif8

Dif12

Ave Expr

adj. P.Val

Gene Assignment

Function

Group

8,149,825

-0.0297

-0.5986

-0.7126

0.2788

0.3121

0.2948

9.7303

7.78E-12

STC1

Growth factors

7,926,900

-0.0312

-0.6082

-0.1792

0.1979

0.0593

0.2146

9.1270

2.17E-06

MAP3K8

ERK pathways

8,139,207

-0.3252

-0.6912

-0.3870

0.0652

0.0955

0.3487

6.6862

1.72E-05

INHBA

Growth factors

8,029,693

-0.5578

-1.3920

1.2786

0.3235

0.1937

-0.2268

6.5645

1.88E-05

FOSB

ERK pathways

7,951,284

0.2147

-0.2445

-0.9981

-0.0006

-0.0489

0.8034

4.4087

0.00010247

MMP3

Extracellular proteases

8,150,509

0.2576

-0.4648

0.1007

0.2679

0.1877

0.2294

9.0473

0.0002872

PLAT

Extracellular proteases

7,951,259

0.5534

-0.9547

-0.5190

0.2045

-0.3736

0.3734

6.3240

0.00045375

MMP10

Extracellular proteases

8,153,201

0.0479

-0.4685

-0.1152

-0.0437

0.3042

-0.2654

10.4016

0.00045375

EIF2C2

 

7,917,649

0.2127

0.0377

0.1270

-0.3302

-0.2098

-0.1283

8.7129

0.00093737

TGFBR3

Growth factors

7,944,769

-0.0572

-0.0887

-0.2799

-0.0066

0.3259

0.1219

10.4395

0.0009716

GRAMD1B

 

8,095,728

0.1828

-0.2296

-0.2194

-0.1545

0.0599

0.3256

11.6033

0.00175164

EREG

Growth factors

7,996,772

-0.0158

0.0041

-0.0028

-0.2563

-0.0490

-0.0799

9.8132

0.00259827

SLC7A6

 

8,154,245

-0.4487

0.2877

0.0338

1.1178

-0.4189

-0.2688

5.9701

0.00317684

PDCD1LG2

ERK pathways

8,124,166

0.1576

-0.0397

0.2982

0.2472

-0.2132

0.0147

7.8654

0.005414

MBOAT1

Lysophopholipids

7,957,298

-0.1566

-0.0458

-0.3356

0.0307

0.2926

0.0490

9.7235

0.00550053

NAV3

 

7,951,271

-0.3148

-0.4711

-0.5804

0.1105

-0.1583

0.5121

7.2633

0.00550053

MMP1

Extracellular proteases

8,091,600

0.1084

-0.0836

0.1036

0.4321

-0.1186

-0.0600

7.4795

0.00550053

PLCH1

Lysophopholipids

7,902,227

0.0436

0.2069

0.3442

0.0419

-0.5557

-0.0956

7.0090

0.00998721

GADD45A

ERK pathways

8,057,677

0.0052

0.1962

-0.0289

-0.4795

0.0687

-0.0085

8.1113

0.00998721

SLC40A1

Iron metabolism

7,997,401

0.0344

-0.1522

0.1799

0.2824

0.2857

-0.0481

7.6882

0.01063101

BCMO1

 

8,054,722

0.2205

-0.9733

-0.1205

-0.0332

0.2151

0.5247

6.2915

0.01063101

IL1B

 

8,152,617

0.0279

-0.1290

-0.3494

-0.2234

0.2312

0.2599

8.8467

0.01211707

HAS2

Extracellular matrix

8,123,609

0.0341

-0.5227

-0.0309

0.1276

0.0553

0.1139

10.1999

0.01306179

SERPINB9

Extracellular matrix

7,961,371

0.0566

-0.2009

-0.1672

-0.0378

-0.0165

0.0102

9.8130

0.01434946

DUSP16

ERK pathways

7,909,214

0.1965

-0.1592

0.0568

0.6090

0.1808

-0.4726

7.2441

0.01434946

RASSF5

ERK pathways

7,908,072

0.1938

-0.2754

-0.2798

0.1108

-0.0594

0.1371

9.7632

0.01434946

LAMC2

Extracellular matrix

8,131,666

-0.1251

-0.4561

0.0721

-0.0613

-0.0307

-0.0677

8.2473

0.01434946

ITGB8

Extracellular matrix

8,146,579

0.0335

0.0855

-0.0022

-0.2335

-0.1355

-0.0524

7.9175

0.01434946

CHD7

 

8,162,940

-0.1683

0.1241

-0.0298

-0.1565

-0.0990

-0.2986

8.7714

0.01759226

ABCA1

 

8,160,521

0.0144

0.0895

0.1278

0.3431

-0.2911

-0.1801

8.5845

0.01906981

MOB3B

 

8,021,635

0.1217

0.0319

-0.4090

-0.3232

0.3902

0.1589

3.6854

0.02025975

SERPINB2

Extracellular matrix

7,987,454

0.1111

0.0995

0.3137

-0.5803

-0.1220

-0.1906

7.2998

0.02025975

BMF

 

8,040,365

0.0105

0.0497

-0.2679

0.0267

-0.7976

0.7653

4.1035

0.0209142

TRIB2

 

7,951,309

-0.0491

-0.1362

-0.6825

0.1977

0.0703

0.2436

3.9447

0.02471666

MMP13

Extracellular proteases

8,072,678

0.1496

-0.0771

-0.3122

0.0068

0.5784

-0.1840

9.9875

0.02655837

HMOX1

Iron metabolism

8,073,214

-0.0930

0.0348

-0.0701

-0.2201

0.0692

-0.2012

8.1931

0.02655837

TNRC6B

 

7,909,332

-0.1267

0.0167

-0.1388

-0.2643

-0.0820

0.4067

10.1092

0.02655837

CD55

 

7,956,009

-0.0204

0.0449

-0.1819

0.0758

0.4650

0.1654

8.1114

0.02655837

METTL7B

 

7,917,347

0.0433

-0.0119

0.2583

-0.1106

-0.2745

-0.2573

9.1879

0.03022086

DDAH1

 

8,132,694

-0.1352

0.0592

-0.1252

-0.3574

0.2755

0.2553

9.9915

0.03722356

IGFBP1

Growth factors

7,954,077

0.0697

0.0799

-0.0287

-0.1959

-0.2314

-0.1436

8.0405

0.03868964

KIAA1467

 

8,121,257

0.0055

-0.3574

-0.0367

0.2346

-0.0094

-0.3641

8.7712

0.04079342

PRDM1

 

8,007,931

-0.0643

-0.0290

0.0077

-0.3214

-0.1882

0.0141

6.1123

0.04321407

ITGB3

 

7,946,478

-0.0081

-0.0778

-0.1677

-0.1382

0.4313

-0.2799

9.9379

0.04328626

DENND5A

 

7,922,229

-0.1620

-0.7991

-0.0055

0.6619

0.2436

0.0700

5.4737

0.04535622

SELE

 

8,129,861

-0.0997

-0.1270

-0.1209

-0.2175

0.0590

-0.0593

9.2467

0.04811681

IFNGR1

 
  1. Ave. Expr: average expression; adj.P. Val: adjust P value. Dif1 – Dif12 are the log2 fold changes associated with each contrast. The contrasts were specified as follows (where Knockdown/Control are the conditions, and 0–12 are the time points of the hours after stimulation):
  2. Dif1=(Knockdown.1 h-Knockdown.0 h)-(Control.1 h-Control.0 h);
  3. Dif2=(Knockdown.2 h-Knockdown.1 h)-(Control.2 h-Control.1 h);
  4. Dif4=(Knockdown.4 h-Knockdown.2 h)-(Control.4 h-Control.2 h);
  5. Dif6=(Knockdown.6 h-Knockdown.4 h)-(Control.6 h-Control.4 h);
  6. Dif8=(Knockdown.8 h-Knockdown.6 h)-(Control.8 h-Control.6 h);
  7. Dif12=(Knockdown.12 h-Knockdown.8 h)-(Control.12 h-Control.8 h).